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Agarwal, A., 2009. Statistical Field Estimation and Scale Estimation for Complex Coastal Regions and Archipelagos (.pdf). SM Thesis, Massachusetts Institute of Technology, Department of Mechanical Engineering, May 2009.
Burton, L.J., 2009. Modeling Coupled Physics and Biology in Ocean Straits with Application to the San Bernardino Strait in the Philippine Archipelago (.pdf). SM Thesis, Massachusetts Institute of Technology, Department of Mechanical Engineering, May 2009.
Heubel, E., 2008. Parameter Estimation and Adaptive Modeling Studies in Ocean Mixing (.pdf). SM Thesis, Massachusetts Institute of Technology, Department of Mechanical Engineering, September 2008.
Sapsis, T.P. and P.F.J. Lermusiaux, 2009. Dynamically orthogonal field equations for continuous stochastic dynamical systems (.pdf). Physica D, 238, 2347-2360, doi:10.1016/j.physd.2009.09.017.
Ramp, S.R., R. E. Davis, N. E. Leonard, I. Shulman, Y. Chao, A. R. Robinson, J. Marsden, P. Lermusiaux, D. Fratantoni, J. D. Paduan, F. Chavez, F. L. Bahr, S. Liang, W. Leslie, and Z. Li, 2009. Preparing to Predict: The Second Autonomous Ocean Sampling Network (AOSN-II) Experiment in the Monterey Bay (.pdf). Special issue on AOSN-II, Deep Sea Research Part II: Topical Studies in Oceanography, 56, 68-86, ISSN 0967-0645, doi:10.1016/j.dsr2.2008.08.013.
Haley, P.J. Jr., P.F.J. Lermusiaux, A.R. Robinson, W.G. Leslie, O. Logutov, et al., 2009. Forecasting and Reanalysis in the Monterey Bay/California Current Region for the Autonomous Ocean Sampling Network-II Experiment (.pdf). Special issue on AOSN-II, Deep Sea Research Part II: Topical Studies in Oceanography, 56, 127-148, ISSN 0967-0645, doi:10.1016/j.dsr2.2008.08.010.
Deleersnijder, E. and P.F.J. Lermusiaux, 2008. Multi-scale modeling: nested grid and unstructured grid approaches (.pdf). Ocean Dynamics, 58, 335-336, doi:10.1007/s10236-008-0170-5.
Logutov, O.G., 2008. A multigrid methodology for assimilation of measurements into regional tidal models (.pdf). Ocean Dynamics, 58, 441-460, doi:10.1007/s10236-008-0163-4
Logutov, O.G. and P.F.J. Lermusiaux, 2008. Inverse Barotropic Tidal Estimation for Regional Ocean Applications (.pdf). Ocean Modelling, 25, 17-34. doi:10.1016/j.ocemod.2008.06.004
Leslie, W.G., A.R. Robinson, P.J. Haley, O. Logoutov, P. Moreno, P.F.J. Lermusiaux, E. Coehlo, 2008. Verification and Training of Real-Time Forecasting of Multi-Scale Ocean Dynamics for MREA (.pdf). Journal of Marine Systems, Vol 69., 3–16.
Lermusiaux, P.F.J. and F. Lekien, 2005. Dynamics and Lagrangian Coherent Structures in the Ocean and their Uncertainty (.pdf). Extended Abstract in Dynamical System Methods in Fluid Dynamics, Oberwolfach Workshop. Jerrold E. Marsden and Jurgen Scheurle (Eds.), Mathematisches Forschungsinstitut Oberwolfach, July 31st - August 6th, 2005, Germany, 19-20.
Robinson, A.R., J. Sellschopp, W.G. Leslie, R. Onken, A. Alvarez, G. Baldasserini, P.J. Haley, Jr., P.F.J. Lermusiaux, C. J. Lozano, E. Nacini, R. Stoner and P. Zanasca, 2005. Real-time Forecasting of Synoptic Transients in the Eastern Ligurian Sea (.pdf). J. of Marine Systems, submitted.
Onken, R., A.R. Robinson, P.F.J. Lermusiaux, P.J. Jr. Haley and L.A. Anderson, 2003. Data-driven simulations of synoptic circulation and transports in the Tunisia-Sardinia-Sicily region (.pdf). J. of Geophysical Research, 108(C9), 8123-8136.
Robinson, A.R., P.J. Haley, P.F.J. Lermusiaux and W.G. Leslie, 2002. Predictive skill, predictive capability and predictability in ocean forecasting (.pdf). Proceedings of "The OCEANS 2002 MTS/IEEE" conference, IEEE, Holland Publications, 787-794.
Lermusiaux, P.F.J., 2001. Evolving the subspace of the three-dimensional multiscale ocean variability: Massachusetts Bay (.pdf). J. Marine Systems, Special issue on "Three-dimensional ocean circulation: Lagrangian measurements and diagnostic analyses", (29), 1-4, 385-422.
Lermusiaux, P.F.J. and A.R. Robinson, 2001. Features of dominant mesoscale variability, circulation patterns and dynamics in the Strait of Sicily (.pdf). Deep Sea Research, (48), 9, 1953-1997.
Lermusiaux, P.F.J., 1999. Estimation and Study of Mesoscale Variability in the Strait of Sicily (.pdf). Dynamics of Atmospheres and Oceans, 29, 255-303.
Erratum to above (.pdf)
Miller, A.J., P.F.J. Lermusiaux, and P.-M. Poulain., 1996. A Topographic-Rossby Mode Resonance over the Iceland-Faeroe Ridge (.pdf). J. of Physical Oceanography, 26(12), 2,735-2,747.
Cossarini, G., P.F.J. Lermusiaux and C. Solidoro, 2009. Lagoon of Venice Ecosystem: Seasonal Dynamics and Environmental Guidance with Uncertainty Analyses and Error Subspace Data Assimilation (.pdf). Journal of Geophysical Research, 114, C06026, doi:10.1029/2008JC005080.
Besiktepe, S.T., P.F.J. Lermusiaux and A.R. Robinson, 2003. Coupled physical and biochemical data driven simulations of Massachusetts Bay in late summer: real-time and post-cruise data assimilation (.pdf). Special issue on "The use of data assimilation in coupled hydrodynamic, ecological and bio-geo-chemical models of the oceans", J. of Marine Systems, M. Gregoire, P. Brasseur and P.F.J. Lermusiaux (Eds.), 40, 171-212.
Robinson, A.R. and the AFMIS Group, 2000. The Development and Demonstration of an Advanced Fisheries Management Information System (.html). Seventeenth International Conference on Interactive Information and Processing Systems (IIPS), 15-17 January, 2001, Albuquerque, New Mexico, American Meteorological Society, Boston, MA, 186-190.
Robinson, A.R. and the LOOPS Group, 1999. Real-time Forecasting of the Multidisciplinary Coastal Ocean with the Littoral Ocean Observing and Predicting System (LOOPS) (.html). Preprint Volume of the Third Conference on Coastal Atmospheric and Oceanic Prediction and Processes, 3-5 November 1999, New Orleans, LA, American Meteorological Society, Boston, MA.
Burton, L.J., A. Puryear, P.F.J. Lermusiaux, and V.W.S. Chan, 2009. Underwater Acoustic Sparse Aperture System Performance: Using Transmitter Channel State Information for Multipath & Interference Rejection (.pdf). Proceedings of the IEEE Oceans Conference (Bremen, Germany, 10-14 May 2009)
Lam, F.P, P.J. Haley, Jr., J. Janmaat, P.F.J. Lermusiaux, W.G. Leslie, M.W. Schouten, L.A. te Raa, and M. Rixen, 2009. At-sea Real-time Coupled Four-dimensional Oceanographic and Acoustic Forecasts during Battlespace Preparation 2007 (.pdf). Special issue of the Journal of Marine Systems on "Coastal processes: Challenges for Monitoring and Prediction", Drs. J.W. Book, Prof. M. Orlic and Michel Rixen (Guest Eds.). doi: 10.1016/j.jmarsys.2009.01.029
Xu, J., P.F.J. Lermusiaux , P.J. Haley Jr. , W.G. Leslie and O.G. Logutov, 2008. Spatial and Temporal Variations in Acoustic propagation during the PLUSNet07 Exercise in Dabob Bay (.pdf). Proceedings of Meetings on Acoustics (POMA), Vol. 4, 155th Meeting Acoustical Society of America, doi: 10.1121/1.2988093.
Robinson, A.R. and P.F.J. Lermusiaux, 2004. Prediction Systems with Data Assimilation for Coupled Ocean Science and Ocean Acoustics (.pdf), Keynote manuscript. Proceedings of the Sixth International Conference on Theoretical and Computational Acoustics, A. Tolstoy, et al. (Eds), World Scientific Publishing, 325-342.
Lermusiaux, P.F.J. and C.-S. Chiu, 2002. Four-dimensional data assimilation for coupled physical-acoustical fields (.pdf). In Acoustic Variability, 2002, N.G. Pace and F.B. Jensen (Eds.), SACLANTCEN. Kluwer Academic Press, 417-424.
Robinson, A.R., P. Abbot, P.F.J. Lermusiaux and L. Dillman, 2002. Transfer of uncertainties through physical-acoustical-sonar end-to-end systems: A conceptual basis (.doc). In Acoustic Variability, 2002, N.G. Pace and F.B. Jensen (Eds.), SACLANTCEN. Kluwer Academic Press, 603-610.
Lermusiaux, P.F.J., C.-S. Chiu and A.R. Robinson, 2002. Modeling Uncertainties in the Prediction of the Acoustic Wavefield in a Shelfbreak Environment (.pdf). Proceedings of the 5th ICTCA, May 21-25, 2001, in Theoretical and Computational Acoustics 2001, E.-C. Shang, Q. Li and T.F. Gao (Eds.), World Scientific Publishing Co., 191-200.
Cossarini, G., P.F.J. Lermusiaux and C. Solidoro, 2009. The Lagoon of Venice Ecosystem: Seasonal Dynamics and Environmental Guidance with Uncertainty Analyses and Error Subspace Data Assimilation (.pdf). Journal of Geophysical Research, In press.
Lermusiaux, P.F.J, 2007. Adaptive Modeling, Adaptive Data Assimilation and Adaptive Sampling (.pdf). Special issue on “Mathematical Issues and Challenges in Data Assimilation for Geophysical Systems: Interdisciplinary Perspectives”. C.K.R.T. Jones and K. Ide, Eds. Physica D, Vol 230, 172-196.
Lermusiaux, P.F.J., C.-S. Chiu, G.G. Gawarkiewicz, P. Abbot, A.R. Robinson, R.N. Miller, P.J. Haley, W.G. Leslie, S.J. Majumdar, A. Pang and F. Lekien, 2006. Quantifying Uncertainties in Ocean Predictions (.pdf). Oceanography, Special issue on "Advances in Computational Oceanography'', T. Paluszkiewicz and S. Harper, Eds., Vol. 19, 1, 92-105.
Lermusiaux, P.F.J., 2006. Uncertainty Estimation and Prediction for Interdisciplinary Ocean Dynamics (.pdf). Special issue on "Uncertainty Quantification". J. Glimm and G. Karniadakis, Eds. Journal of Computational Physics, 176-199.
Lermusiaux, P.F.J., P. Malanotte-Rizzoli, D. Stammer, J. Carton, J. Cummings and A.M. Moore, 2006. Progress and Prospects of U.S. Data Assimilation in Ocean Research (.pdf). Oceanography, Special issue on "Advances in Computational Oceanography'', T. Paluszkiewicz and S. Harper, Eds., Vol. 19, 1, 172-183.
Gregoire, M., Brasseur P. and P.F.J Lermusiaux, 2003. Preface - 33rd International Liege Colloquium on Ocean Dynamics - Liege, Belgium, May 7-11, 2001 - The use of data assimilation in coupled hydrodynamic, ecological and biogeochemical models of the ocean (.pdf). J. Marine Systems, 40, 1-3.
Lermusiaux, P.F.J., A.R. Robinson, P.J. Haley and W.G. Leslie, 2002. Advanced interdisciplinary data assimilation: Filtering and smoothing via Error Subspace Statistical Estimation (.pdf). Proceedings of "The OCEANS 2002 MTS/IEEE'' conference, IEEE, Holland Publications, 795-802.
Lermusiaux, P.F.J., 2002. On the mapping of multivariate geophysical fields: sensitivity to size, scales and dynamics (.pdf). J. of Atmos. Oceanic Tech., 19, 1602-1637. For color figures, see pdf with color.
Robinson, A.R. and P.F.J. Lermusiaux, 2002. Data assimilation for modeling and predicting coupled physical-biological interactions in the sea (.pdf). In The Sea: Volume 12: Biological-Physical Interactions in the Ocean., Robinson, A.R., J.R. McCarthy and B.J. Rothschild (Eds.). pp 475-536. Copyrighted by John Wiley & Sons. For word document, see:
Robinson, A.R. and P.F.J. Lermusiaux, 2001. Data Assimilation in Models (.pdf). Encyclopedia of Ocean Sciences, Academic Press Ltd., London, 623-634.
Robinson, A.R. and P.F.J. Lermusiaux, 2000. Overview of Data Assimilation (.html), Harvard University Reports in Physical/Interdisciplinary Ocean Science #62, Harvard University.
Lermusiaux, P.F.J., D.G.M. Anderson and C.J. Lozano, 2000. On the mapping of multivariate geophysical fields: Error and variability subspace estimates (.pdf). Q.J.R. Meteorol. Soc., 126, 1387-1429
Lermusiaux, P.F.J., 1999. Data Assimilation via Error Subspace Statistical Estimation, Part II: Mid-Atlantic Bight Shelfbreak Front Simulations, and ESSE Validation (.pdf). Monthly Weather Review, Vol. 127(8), 1408-1432.
Lermusiaux, P.F.J. and A.R. Robinson., 1999. Data Assimilation via Error Subspace Statistical Estimation, Part I: Theory and Schemes (.pdf). Monthly Weather Review, Vol. 127(8), 1385-1407.
Wang, D., P.F.J. Lermusiaux, P.J. Haley, D. Eickstedt, W.G. Leslie and H. Schmidt, 2009. Acoustically Focused Adaptive Sampling and On-board Routing for Marine Rapid Environmental Assessment (.pdf). Special issue of the Journal of Marine Systems on "Coastal Processes: Challenges for Monitoring and Prediction", Drs. J.W. Book, Prof. M. Orlic and Michel Rixen (Guest Eds), In Press, doi: 10.1016/j.jmarsys.2009.01.037.
Yilmaz N.K., C. Evangelinos, P.F.J. Lermusiaux and N. Patrikalakis, 2008. Path Planning of Autonomous Underwater Vehicles for Adaptive Sampling Using Mixed Integer Linear Programming (.pdf). IEEE Transactions, Journal of Oceanic Engineering. Vol. 33 (4), pp. 522-537. doi: 10.1109/JOE.2008.2002105
Lermusiaux, P.F.J, 2007. Adaptive Modeling, Adaptive Data Assimilation and Adaptive Sampling (.pdf). Special issue on “Mathematical Issues and Challenges in Data Assimilation for Geophysical Systems: Interdisciplinary Perspectives”. C.K.R.T. Jones and K. Ide, Eds. Physica D, Vol 230, 172-196.
Heaney, K.D., G. Gawarkiewicz, T.F. Duda and P.F.J. Lermusiaux, 2007. Non-linear Optimization of Autonomous Undersea Vehicle Sampling Strategies for Oceanographic Data-Assimilation (.pdf). Special issue on “Underwater Robotics”, Journal of Field Robotics, Vol. 24(6), 437–448.
Lermusiaux, P.F.J., P.J. Haley Jr. and N.K. Yilmaz, 2007. Environmental Prediction, Path Planning and Adaptive Sampling: Sensing and Modeling for Efficient Ocean Monitoring, Management and Pollution Control (.pdf). Sea Technology, Vol. 48(9), 35–38.
Yilmaz, N.K., C. Evangelinos, N.M. Patrikalakis, P.F.J. Lermusiaux, P.J. Haley, W.G. Leslie, A.R. Robinson, D. Wang and H. Schmidt, 2006. Path Planning Methods for Adaptive Sampling of Environmental and Acoustical Ocean Fields (.pdf). Proceedings of IEEE/MTS Oceans'06 Conference, Boston, MA, September 18-21, 2006, 6pp.
Wang, D., P.F.J. Lermusiaux, P.J. Haley, W.G. Leslie and H. Schmidt, 2006. Adaptive Acoustical-Environmental Assessment for the Focused Acoustic Field-05 At-sea Exercise (.pdf). Proceedings of IEEE/MTS Oceans'06 Conference, Boston, MA, September 18-21. 6pp.
Lermusiaux, P.F.J, C. Evangelinos, R. Tian, P.J. Haley, J.J. McCarthy, N.M. Patrikalakis, A.R. Robinson and H. Schmidt, 2004. Adaptive Coupled Physical and Biogeochemical Ocean Predictions: A Conceptual Basis (.pdf). In "Computational Science - ICCS 2004'', F. Darema (ed.), Lecture Notes in Computer Science, 3038, 685-692.
Djurcilov, S., K. Kim, P.F.J. Lermusiaux and A. Pang, 2002. Visualizing scalar volumetric data with uncertainty (.pdf). Computers and Graphics, 26 (2): 239-248.
Djurcilov, S., K. Kim, P.F.J. Lermusiaux and A. Pang, 2001. Volume rendering data with uncertainty information (.pdf). In "Data visualization'', Joint Eurographics - IEEE TCVG Symposium on Visualization, D. Ebert, J. M. Favre and R. Peikert (Eds.), Springer Verlag, pp. 243-252, 355-356.
Evangelinos, C., P.F.J. Lermusiaux, J.Xu, P.J. Haley, and C.N. Hill, 2009. Many Task Computing for Multidisciplinary Ocean Sciences: Real-Time Uncertainty Prediction and Data Assimilation (.pdf). Proceedings of the 2nd Workshop on Many-Task Computing on Grids and Supercomputers (Portland, OR, 16 November 2009), In press.
Patrikalakis, N.M., P.F.J. Lermusiaux, C. Evangelinos, J.J. McCarthy, A.R. Robinson, H. Schmidt, P.J. Haley, S. Lalis, R. Tian, W.G. Leslie, and W. Cho, 2009. Towards Dynamic Data Driven Systems for Rapid Adaptive Interdisciplinary Ocean Forecasting (.pdf). Invited paper in "Dynamic Data-Driven Application Systems''. F. Darema, Editor. Springer, 2009. In press.
Evangelinos, C., P.F.J. Lermusiaux, S. Geiger, R.C. Chang, and N.M. Patrikalakis, 2006. Web-Enabled Configuration and Control of Legacy Codes: An Application to Ocean Modeling (.pdf). Ocean Modeling, 13, 197-220.
Lermusiaux, P.F.J, C. Evangelinos, R. Tian, P.J. Haley, J.J. McCarthy, N.M. Patrikalakis, A.R. Robinson and H. Schmidt, 2004. Adaptive Coupled Physical and Biogeochemical Ocean Predictions: A Conceptual Basis (.pdf). In "Computational Science - ICCS 2004'', F. Darema (ed.), Lecture Notes in Computer Science, 3038, 685-692.
Evangelinos, C., R. Chang, P.F.J. Lermusiaux and N.M. Patrikalakis, 2003. Rapid Real-Time Interdisciplinary Ocean Forecasting using Adaptive Sampling and Adaptive Modeling and Legacy Codes: Component Encapsulation using XML (.pdf). In "Computational Science - ICCS 2003'', P.M.A. Sloot, D. Abramson, A. Bogdanov, J.J. Dongarra, A. Zomaya, Y. Gorbachev (Eds.). Lecture Notes in Computer Science, 2660, 375-384.