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Manan and Manmeet’s CDC Conference Paper Accepted

Congratulations to Manan and Manmeet for having their paper “Hamilton–Jacobi Multi-Time Reachability” accepted to the IEEE CDC Conference! This paper will be presented at the 61st IEEE Conference on Decision and Control, from Dec. 6-9, 2022, in Cancún, Mexico. More information about this paper, including the abstract, can be found here.

Scientific Machine Learning for Dynamical Systems: Theory and Applications to Fluid Flow and Ocean Ecosystem Modeling

Gupta, A., 2022. Scientific Machine Learning for Dynamical Systems: Theory and Applications to Fluid Flow and Ocean Ecosystem Modeling. Ph.D. Thesis, Massachusetts Institute of Technology, Department of Mechanical Engineering, September 2022.

Complex dynamical models are used for prediction in many domains, and are useful to mitigate many of the grand challenges being faced by humanity, such as climate change, food security, and sustainability. However, because of computational costs, complexity of real-world phenomena, and limited understanding of the underlying processes involved, models are invariably approximate. The missing dynamics can manifest in the form of unresolved scales, inexact processes, or omitted variables; as the neglected and unresolved terms become important, the utility of model predictions diminishes. To address these challenges, we develop and apply novel scientific machine learning methods to learn unknown and discover missing dynamics in models of dynamical systems.

In our Bayesian approach, we develop an innovative stochastic partial differential equation (PDE) – based model learning framework for high-dimensional coupled biogeochemical-physical models. The framework only uses sparse observations to learn rigorously within and outside of the model space as well as in that of the states and parameters. It employs Dynamically Orthogonal (DO) differential equations for adaptive reduced-order stochastic evolution, and the Gaussian Mixture Model-DO (GMM-DO) filter for simultaneous nonlinear inference in the augmented space of state variables, parameters, and model equations. A first novelty is the Bayesian learning among compatible and embedded candidate models enabled by parameter estimation with special stochastic parameters. A second is the principled Bayesian discovery of new model functions empowered by stochastic piecewise polynomial approximation theory. Our new methodology not only seamlessly and rigorously discriminates between existing models, but also extrapolates out of the space of models to discover newer ones. In all cases, the results are generalizable and interpretable, and associated with probability distributions for all learned quantities. To showcase and quantify the learning performance, we complete both identical-twin and real-world data experiments in a multidisciplinary setting, for both filtering forward and smoothing backward in time. Motivated by active coastal ecosystems and fisheries, our identical twin experiments consist of lower-trophic-level marine ecosystem and fish models in a two-dimensional idealized domain with flow past a seamount representing upwelling due to a sill or strait. Experiments have varying levels of complexities due to different learning objectives and flow and ecosystem dynamics. We find that even when the advection is chaotic or stochastic from uncertain nonhydrostatic variable-density Boussinesq flows, our framework successfully discriminates among existing ecosystem candidate models and discovers new ones in the absence of prior knowledge, along with simultaneous state and parameter estimation. Our framework demonstrates interdisciplinary learning and crucially provides probability distributions for each learned quantity including the learned model functions. In the real-world data experiments, we configure a one-dimensional coupled physical-biological-carbonate model to simulate the state conditions encountered by a research cruise in the Gulf of Maine region in August, 2012. Using the observed ocean acidification data, we learn and discover a salinity based forcing term for the total alkalinity (TA) equation to account for changes in TA due to advection of water masses of different salinity caused by precipitation, riverine input, and other oceanographic processes. Simultaneously, we also estimate the multidisciplinary states and an uncertain parameter. Additionally, we develop new theory and techniques to improve uncertainty quantification using the DO methodology in multidisciplinary settings, so as to accurately handle stochastic boundary conditions, complex geometries, and the advection terms, and to augment the DO subspace as and when needed to capture the effects of the truncated modes accurately. Further, we discuss mutual-information-based observation planning to determine what, when, and where to measure to best achieve our learning objectives in resource-constrained environments.

Next, motivated by the presence of inherent delays in real-world systems and the Mori-Zwanzig formulation, we develop a novel delay-differential-equations-based deep learning framework to learn time-delayed closure parameterizations for missing dynamics. We find that our neural closure models increase the long-term predictive capabilities of existing models, and require smaller networks when using non-Markovian over Markovian closures. They efficiently represent truncated modes in reduced-order models, capture effects of subgrid-scale processes, and augment the simplification of complex physical-biogeochemical models. To empower our neural closure models framework with generalizability and interpretability, we further develop neural partial delay differential equations theory that augments low-fidelity models in their original PDE forms with both Markovian and non-Markovian closure terms parameterized with neural networks (NNs). For the first time, the melding of low-fidelity model and NNs with time-delays in the continuous spatiotemporal space followed by numerical discretization automatically provides interpretability and allows for generalizability to computational grid resolution, boundary conditions, initial conditions, and problem specific parameters. We derive the adjoint equations in the continuous form, thus, allowing implementation of our new methods across differentiable and non-differentiable computational physics codes, different machine learning frameworks, and also non-uniformly-spaced spatiotemporal training data. We also show that there exists an optimal amount of past information to incorporate, and provide methodology to learn it from data during the training process. Computational advantages associated with our frameworks are analyzed and discussed. Applications of our new neural closure modeling framework are not limited to the shown fluid and ocean experiments, but can be widely extended to other fields such as control theory, robotics, pharmacokinetic-pharmacodynamics, chemistry, economics, and biological regulatory systems.

NAS Machine Learning February Workshop Report and Proceedings Now Available

A new report from the National Academies’ February workshop on Machine Learning and Artificial Intelligence to Advance Earth System Science: Opportunities and Challenges has been completed. The proceedings summarizing the workshop discussions have also been published.

ML-SCOPE Team To Publish Special Issue in Ocean Modelling

The ML-SCOPE Team will soon be publishing a special issue “Machine Learning for Ocean Modelling” in the journal Ocean Modelling. Prof. Pierre Lermusiaux and the other ML-SCOPE co-PIs will serve as guest editors. Submissions are open until September 30, 2022. Additional information can be found on the journal website.

Stochastic Acoustic Ray Tracing with Dynamically Orthogonal Differential Equations

Humara, M.J., W.H. Ali, A. Charous, M. Bhabra, and P.F.J. Lermusiaux, 2022. Stochastic Acoustic Ray Tracing with Dynamically Orthogonal Differential Equations. In: OCEANS '22 IEEE/MTS Hampton Roads, 17–20 October 2022, pp. 1–10. doi:10.1109/OCEANS47191.2022.9977252

Developing accurate and computationally efficient models for underwater sound propagation in the uncertain, dynamic ocean environment is inherently challenging. In this work, we evaluate the potential of dynamic reduced-order modeling for stochastic ray tracing. We obtain and implement the stochastic dynamically-orthogonal (DO) differential equations for Ray Tracing (DO-Ray). With stochastic DO-Ray, we can start from non-Gaussian environmental uncertainties and compute the stochastic acoustic ray fields in a dynamic reduced order fashion, all while preserving the dominant complex statistics of the ocean environment and the nonlinear relations with ray dynamics. We develop varied algorithms and discuss implementation challenges and solutions, using direct Monte Carlo for comparison. We showcase results in an uncertain deep-sound channel example and observe the ability to represent the stochastic ray trace fields in a dynamic reduced-order fashion.