Loading content ...
Click here for a listing of our most recent papers (2007-2013). Click here for a full listing of all of our papers, separated into proceedings and articles.
Uncertainty Quantification and Data Assimilation Schemes
Uncertainty Quantification and Predictions
Papers in Refereed Journals
- Ueckermann, M.P., P.F.J. Lermusiaux and T.P. Sapsis, 2013. Numerical Schemes for Dynamically Orthogonal Equations of Stochastic Fluid and Ocean Flows. J. Comp. Phys., 233, 272-294, doi: 10.1016/j.jcp.2012.08.041.
- Rixen, M., P.F.J. Lermusiaux and J. Osler, (Guest Eds.), 2012. Quantifying, Predicting and Exploiting Maritime Environmental Uncertainties, Ocean Dynamics, 62(3):495–499, doi: 10.1007/s10236-012-0526-8.
- Sapsis, T.P. and P.F.J. Lermusiaux, 2012. Dynamical criteria for the evolution of the stochastic dimensionality in flows with uncertainty. Physica D, 241(1), 60-76, doi:10.1016/j.physd.2011.10.001.
- Sapsis, T.P. and P.F.J. Lermusiaux, 2009. Dynamically orthogonal field equations for continuous stochastic dynamical systems. Physica D, 238, 2347-2360, doi:10.1016/j.physd.2009.09.017.
- Lermusiaux, P.F.J., 2006. Uncertainty Estimation and Prediction for Interdisciplinary Ocean Dynamics. Refereed manuscript, Special issue on "Uncertainty Quantification". J. Glimm and G. Karniadakis, Eds. Journal of Computational Physics, 217, 176-199. doi: 10.1016/j.jcp.2006.02.010.
- Lermusiaux, P.F.J., C.-S. Chiu, G.G. Gawarkiewicz, P. Abbot, A.R. Robinson, R.N. Miller, P.J. Haley, W.G. Leslie, S.J. Majumdar, A. Pang and F. Lekien, 2006. Quantifying Uncertainties in Ocean Predictions. Refereed invited manuscript. Oceanography, Special issue on "Advances in Computational Oceanography", T. Paluszkiewicz and S. Harper (Office of Naval Research), Eds., 19, 1, 92-105, doi: 10.5670/oceanog.2006.93.
- Lermusiaux, P.F.J., 2001. Evolving the subspace of the three-dimensional multiscale ocean variability: Massachusetts Bay. Journal of Marine Systems, Special issue on "Three-dimensional ocean circulation: Lagrangian measurements and diagnostic analyses", 29/1-4, 385-422, doi: 10.1016/S0924-7963(01)00025-2.
Data Assimilation
Papers in Refereed Journals
- Sondergaard, T. and P.F.J. Lermusiaux, 2012b. Data Assimilation with Gaussian Mixture Models using the Dynamically Orthogonal Field Equations. Part II: Applications. Monthly Weather Review, doi:10.1175/MWR-D-11-00296.1, in press.
- Sondergaard, T. and P.F.J. Lermusiaux, 2012a. Data Assimilation with Gaussian Mixture Models using the Dynamically Orthogonal
Field Equations. Part I. Theory and Scheme. Monthly Weather Review, doi:10.1175/MWR-D-11-00295.1, in press.
- Lermusiaux, P.F.J., P. Malanotte-Rizzoli, D. Stammer, J. Carton, J. Cummings and A.M. Moore, 2006. "Progress and Prospects of U.S. Data Assimilation in Ocean Research". Oceanography, Special issue on "Advances in Computational Oceanography", T. Paluszkiewicz and S. Harper, Eds., 19, 1, 172-183.
- Gregoire, M., P. Brasseur and P.F.J. Lermusiaux (Guest Eds.), 2003. The use of data assimilation in coupled hydrodynamic, ecological and bio-geo-chemical models of the ocean. Journal of Marine Systems, 40, 1-3.
- Robinson, A.R. and P.F.J. Lermusiaux, 2002. Data assimilation for modeling and predicting coupled physical-biological interactions in the sea. In "The Sea, Vol. 12: Biological-Physical Interactions in the Ocean", Robinson A.R., J.R. McCarthy and B.J. Rothschild (Eds.). 475-536.
- Lermusiaux, P.F.J., 2002. On the mapping of multivariate geophysical fields: sensitivity to size, scales and dynamics. Journal of Atmospheric and Oceanic Technology, 19, 1602-1637.
- Robinson, A.R. and P.F.J. Lermusiaux, 2001. Data Assimilation in Models. Encyclopedia of Ocean Sciences, Academic Press Ltd., London, 623-634.
- Lermusiaux, P.F.J., D.G.M. Anderson and C.J. Lozano, 2000. On the mapping of multivariate geophysical fields: error and variability subspace estimates. The Quarterly Journal of the Royal Meteorological Society, April B, 1387-1430.
- Lermusiaux, P.F.J., 1999a. Data assimilation via Error Subspace Statistical Estimation. Part II: Middle Atlantic Bight shelfbreak front simulations and ESSE validation. Monthly Weather Review, 127(7), 1408-1432, doi: 10.1175/1520-0493(1999)127<1408:DAVESS>
2.0.CO;2.
- Lermusiaux, P.F.J. and A.R. Robinson, 1999. Data assimilation via Error Subspace Statistical Estimation. Part I: Theory and schemes. Monthly Weather Review, 127(7), 1385-1407,
doi: 10.1175/1520-0493(1999)
127<1385:DAVESS>2.0.CO;2.
- Robinson, A.R., P.F.J. Lermusiaux and N.Q. Sloan, III, 1998. Data Assimilation. In "The Sea: The Global Coastal Ocean I", Processes and Methods (K.H. Brink and A.R. Robinson, Editors), Volume 10, John Wiley and Sons, New York, NY, 541-594
Proceedings of Refereed Conferences
- Lermusiaux, P.F.J. and C.-S. Chiu, 2002. Four-dimensional data assimilation for coupled physical-acoustical fields. In "Acoustic Variability, 2002". N.G. Pace and F.B. Jensen (Eds.), Saclantcen. Kluwer Academic Press, 417-424.
- Lermusiaux, P.F.J., A.R. Robinson, P.J. Haley and W.G. Leslie, 2002. Advanced interdisciplinary data assimilation: Filtering and smoothing via error subspace statistical estimation. Proceedings of "The OCEANS 2002 MTS/IEEE" conference, Holland Publications, 795-802.
Path Planning and Adaptive Sampling
Papers in Refereed Journals
- Lermusiaux P.F.J, T. Lolla, P.J. Haley. Jr., K. Yigit, M.P. Ueckermann, T. Sondergaard and W.G. Leslie, 2013. Science of Autonomy: Time-Optimal Path Planning and Adaptive Sampling for Swarms of Ocean Vehicles. Chapter 11, Springer Handbook of Ocean Engineering: Autonomous Ocean Vehicles, Subsystems and Control, Tom Curtin (Ed.), submitted.
- Lolla, T., P.F.J. Lermusiaux, M.P. Ueckermann and P.J. Haley, Jr., 2013. Time-Optimal Path Planning in Dynamic Flows using Level Set Equations: Theory and Schemes. J. Comp. Phys., submitted.
- Wang, D., P.F.J. Lermusiaux, P.J. Haley, D. Eickstedt, W.G. Leslie and H. Schmidt, 2009. Acoustically Focused Adaptive Sampling and On-board Routing for Marine Rapid Environmental Assessment. Special issue of Journal of Marine Systems on "Coastal processes: challenges for monitoring and prediction", Drs. J.W. Book, Prof. M. Orlic and Michel Rixen (Guest Eds), 78, S393-S407, doi: 10.1016/j.jmarsys.2009.01.037.
- Yilmaz, N.K., C. Evangelinos, P.F.J. Lermusiaux and N. Patrikalakis, 2008. Path Planning of Autonomous Underwater Vehicles for Adaptive Sampling Using Mixed Integer Linear Programming. IEEE Transactions, Journal of Oceanic Engineering, 33 (4), 522-537. doi: 10.1109/JOE.2008.2002105.
- Lermusiaux, P.F.J, 2007. Adaptive Modeling, Adaptive Data Assimilation and Adaptive Sampling. Refereed invited manuscript. Special issue on "Mathematical Issues and Challenges in Data Assimilation for Geophysical Systems: Interdisciplinary Perspectives". C.K.R.T. Jones and K. Ide, Eds. Physica D, Vol 230, 172-196, doi:
10.1016/j.physd.2007.02.014.
- Lermusiaux, P.F.J., P.J. Haley Jr. and N.K. Yilmaz, 2007. Environmental Prediction, Path Planning and Adaptive Sampling: Sensing and Modeling for Efficient Ocean Monitoring, Management and Pollution Control. Sea Technology, 48(9), 35-38.
- Heaney, K.D., G. Gawarkiewicz, T.F. Duda and P.F.J. Lermusiaux, 2007. Non-linear Optimization of Autonomous Undersea Vehicle Sampling Strategies for Oceanographic Data-Assimilation. Special issue on "Underwater Robotics", Journal of Field Robotics, 24(6), 437-448, doi:10.1002/rob.20183.
Proceedings of Refereed Conferences
- Lolla, T.; Ueckermann, M.P.; Yigit, K.; Haley, P.J.; Lermusiaux, P.F.J., 2012, Path planning in time dependent flow fields using level set methods, 2012 IEEE International Conference on Robotics and Automation (ICRA), 166-173, 14-18 May 2012,
doi: 10.1109/ICRA.2012.6225364.
- Wang, D., P.F.J. Lermusiaux, P.J. Haley, W.G. Leslie and H. Schmidt, 2006. Adaptive Acoustical-Environmental Assessment for the Focused Acoustic Field-05 At-sea Exercise, Oceans 2006, 6pp, Boston, MA, 18-21 Sept. 2006, doi: 10.1109/OCEANS.2006.306904.
- Yilmaz, N.K., C. Evangelinos, N.M. Patrikalakis, P.F.J. Lermusiaux, P.J. Haley, W.G. Leslie, A.R. Robinson, D. Wang and H. Schmidt, 2006a. Path Planning Methods for Adaptive Sampling of Environmental and Acoustical Ocean Fields, Oceans 2006, 6pp, Boston, MA, 18-21 Sept. 2006, doi: 10.1109/OCEANS.2006.306841.
Adaptive Modeling
Papers in Refereed Journals
- Lermusiaux, P.F.J, 2007. Adaptive Modeling, Adaptive Data Assimilation and Adaptive Sampling. Refereed invited manuscript. Special issue on "Mathematical Issues and Challenges in Data Assimilation for Geophysical Systems: Interdisciplinary Perspectives". C.K.R.T. Jones and K. Ide, Eds. Physica D, Vol 230, 172-196, doi:
10.1016/j.physd.2007.02.014.
- Lermusiaux, P.F.J, C. Evangelinos, R. Tian, P.J. Haley, J.J. McCarthy, N.M. Patrikalakis, A.R. Robinson and H. Schmidt, 2004. Adaptive Coupled Physical and Biogeochemical Ocean Predictions: A Conceptual Basis. Refereed invited manuscript, F. Darema (Ed.), Lecture Notes in Computer Science, 3038, 685-692.
Applications to Ocean Dynamics
Physical Oceanography
Papers in Refereed Journals
- Sapsis, T.P., M.P. Ueckermann and P.F.J. Lermusiaux, 2012. Global Analysis of Navier-Stokes and Boussinesq Stochastic Flows using Dynamical Orthogonality, J. Fluid Mech., submitted.
- Gawarkiewicz, G., S. Jan, P.F.J. Lermusiaux, J.L. McClean, L. Centurioni, K. Taylor, B. Cornuelle, T.F. Duda, J. Wang, Y.J. Yang, T. Sanford, R.-C. Lien, C. Lee, M.-A. Lee, W. Leslie, P.J. Haley Jr., P.P. Niiler, G. Gopalakrishnan, P. Velez-Belchi, D.-K. Lee, and Y.Y. Kim. 2011. Circulation and intrusions northeast of Taiwan: Chasing and predicting uncertainty in the cold dome. Oceanography, 24(4):110-121, http://dx.doi.org/10.5670/oceanog.2011.99.
- Lermusiaux, P.F.J, A.J. Miller and N. Pinardi, 2011. Special issue of Dynamics of Atmospheres and Oceans in honor of Prof. A.R. Robinson, Editorial, Dynamics of Atmospheres and Oceans, 52, 1-3, doi:10.1016/j.dynatmoce.2011.08.001.
- Ramp, S.R., P.F.J. Lermusiaux, I. Shulman, Y. Chao, R.E. Wolf, and F.L. Bahr, 2011. Oceanographic and Atmospheric Conditions on the Continental Shelf North of the Monterey Bay during August 2006. Dynamics of Atmospheres and Oceans, 52, 192-223, doi:10.1016/j.dynatmoce.2011.04.005.
- Gangopadhyay, A., P.F.J. Lermusiaux, L. Rosenfeld, A.R. Robinson, L. Calado, H.S. Kim, W.G. Leslie and P.J. Haley, Jr., 2011. The California Current System: A Multiscale Overview and the Development of a Feature-Oriented Regional Modeling System (FORMS). Dynamics of Atmospheres and Oceans, 52, 131-169, doi:10.1016/j.dynatmoce.2011.04.003.
- Lermusiaux, P.F.J., P.J. Haley, Jr., W.G. Leslie, A. Agarwal, O. Logutov and L.J. Burton, 2011. Multiscale Physical and Biological Dynamics in the Philippines Archipelago: Predictions and Processes. Oceanography. PhilEx Issue, 24(1), 70-89, doi:10.5670/oceanog.2011.05.
- Ramp, S.R., R. E. Davis, N. E. Leonard, I. Shulman, Y. Chao, A. R. Robinson, J. Marsden, P.F.J. Lermusiaux, D. Fratantoni, J. D. Paduan, F. Chavez, F. L. Bahr, S. Liang, W. Leslie, and Z. Li, 2009. Preparing to Predict: The Second Autonomous Ocean Sampling Network (AOSN-II) Experiment in the Monterey Bay. Special issue on AOSN-II, Deep Sea Research, Part II, 56, 68-86, doi: 10.1016/j.dsr2.2008.08.013.
- Haley, P.J. Jr., P.F.J. Lermusiaux, A.R. Robinson, W.G. Leslie, O. Logutov, G. Cossarini, X.S. Liang, P. Moreno, S.R. Ramp, J.D. Doyle, J. Bellingham, F. Chavez, S. Johnston, 2009. Forecasting and Reanalysis in the Monterey Bay/California Current Region for the Autonomous Ocean Sampling Network-II Experiment. Special issue on AOSN-II, Deep Sea Research, Part II. ISSN 0967-0645, doi: 10.1016/j.dsr2.2008.08.010.
- Logutov, O.G., 2008. A multigrid methodology for assimilation of measurements into
regional tidal models. Ocean Dynamics, 58, 441-460, doi:10.1007/s10236-008-0163-4.
- Onken, R., A.R. Robinson, P.F.J. Lermusiaux, P.J. Haley Jr. and L.A. Anderson, 2003. Data driven simulations of synoptic circulation and transports in the Tunisia-Sardinia-Sicily region. Journal of Geophysical Research, 108, (C9), 8123-8136.
- Lermusiaux, P.F.J. and A.R. Robinson, 2001. Features of dominant mesoscale variability, circulation patterns and dynamics in the Strait of Sicily. Deep Sea Research. 48, (9), 1953-1997.
- Lermusiaux, P.F.J., 1999b. Estimation and study of mesoscale variability in the Strait of Sicily. Dynamics of Atmospheres and Oceans, 29, 255-303.
- Robinson, A.R., J. Sellschopp, A. Warn-Varnas, W.G. Leslie, C.J. Lozano, P.J. Haley Jr., L.A. Anderson and P.F.J. Lermusiaux, 1999. The Atlantic Ionian Stream. Journal of Marine Systems, 20, 129-156.
- Miller, A.J., P.F.J. Lermusiaux and P.-M. Poulain, 1996. A Topographic-Rossby mode resonance over the Iceland-Faeroe Ridge. Journal of Physical Oceanography, 26 (12), 2735-2747.
doi: http://dx.doi.org/10.1175/1520-0485(1996)026<2735:ATMROT>2.0.CO;2.
Biogeochemical-Physical Interactions
Papers in Refereed Journals
- Cossarini, G., P.F.J. Lermusiaux, and C. Solidoro, 2009. Lagoon of Venice ecosystem: Seasonal dynamics and environmental guidance with uncertainty analyses and error subspace data assimilation, J. Geophys. Res., 114, C06026, doi:10.1029/2008JC005080.
- Besiktepe, S.T., P.F.J. Lermusiaux and A.R. Robinson, 2003. Coupled physical and biogeochemical data driven simulations of Massachusetts Bay in late summer: real-time and post-cruise data assimilation. Special issue on "The use of data assimilation in coupled hydrodynamic, ecological and bio-geo-chemical models of the oceans", M. Gregoire, P. Brasseur and P.F.J. Lermusiaux (Eds.), Journal of Marine Systems, 40, 171-212.
Acoustical-Physical Interactions
Papers in Refereed Journals
- Lermusiaux, P.F.J., J. Xu, C.F. Chen, S. Jan, L.Y. Chiu and Y.-J. Yang, 2010. Coupled Ocean-Acoustic prediction of transmission loss in a continental shelfbreak region: predictive skill, uncertainty quantification and dynamical sensitivities. IEEE Transactions, Journal of Oceanic Engineering, 35(4) 895-916. doi:10.1109/JOE.2010.2068611.
- Lin, Y.-T., A.E. Newhall, T.F. Duda, P.F. J. Lermusiaux and P.J. Haley, Jr., 2010. Merging Multiple Partial-Depth Data Time Series Using Objective Empirical Orthogonal Function Fitting. IEEE Transactions, Journal of Oceanic Engineering. 35(4) 710-721. doi:10.1109/JOE.2010.2052875.
- Lam, F.P, P.J. Haley, Jr., J. Janmaat, P.F.J. Lermusiaux, W.G. Leslie, and M.W. Schouten, 2009. At-sea Real-time Coupled Four-dimensional Oceanographic and Acoustic Forecasts during Battlespace Preparation 2007. Special issue of the Journal of Marine Systems on "Coastal processes: challenges for monitoring and prediction", Drs. J.W. Book, Prof. M. Orlic and Michel Rixen (Guest Eds.), 78, S306-S320, doi: 10.1016/j.jmarsys.2009.01.029.
Proceedings of Refereed Conferences
- Colin, M.E.G.D., T.F. Duda, L.A. te Raa, T. van Zon, P.J. Haley, Jr., P.F.J. Lermusiaux, W.G. Leslie, C. Mirabito, F.P.A. Lam, A.E. Newhall, Y.-T. Lin, J.F. Lynch, 2013. Time-Evolving Acoustic Propagation Modeling in a Complex Ocean Environment, Proceedings of MTS/IEEE OCEANS 2013, Bergen, submitted.
- Duda, T.F., Y.-T. Lin, W.G. Zhang, B.D. Cornuelle, P.F.J. Lermusiaux, 2011. Computational Studies of 3D Ocean sound fields in areas of complex seafloor topography and active ocean dynamics. Proceedings of the 10th International Conference on Theoretical and Computational Acoustics, NTU, Taiwan, 12pp.
- Puryear, A., L.J. Burton, P.F.J. Lermusiaux, and V.W.S. Chan, 2009. Underwater acoustic sparse aperture system performance: Using transmitter channel state information for multipath & interference rejection. OCEANS 2009-EUROPE, pp. 1-9, 11-14 May 2009, doi:10.1109/OCEANSE.2009.5278156.
- Xu, J., P.F.J. Lermusiaux, P.J. Haley Jr., W.G. Leslie and O.G. Logutov, 2008. Spatial and Temporal Variations in Acoustic propagation during the PLUSNet-07 Exercise in Dabob Bay. Acoustical Society of America, Proceedings of Meetings on Acoustics (POMA). 155th Meeting, Vol. 4. 11pp. doi: 10.1121/1.2988093.
- Robinson, A.R. and P.F.J. Lermusiaux, 2004. Prediction Systems with Data Assimilation for Coupled Ocean Science and Ocean Acoustics, Proceedings of the Sixth International Conference on Theoretical and Computational Acoustics (A. Tolstoy, et al., editors), World Scientific Publishing, 325-342. Refereed invited Keynote Manuscript.
- Lermusiaux, P.F.J., C.-S. Chiu and A.R. Robinson, 2002. Modeling Uncertainties in the Prediction of the Acoustic Wavefield in a Shelfbreak Environment. Refereed invited Manuscript, Proceedings of the 5th International conference on theoretical and computational acoustics, May 21-25, 2001. (Eds: E.-C. Shang, Q. Li and T.F. Gao), World Scientific Publishing Co., 191-200.
Numerical Modeling
Multiscale Ocean Modeling
Papers in Refereed Journals
- Agarwal, A. and P.F.J. Lermusiaux, 2011. Statistical Field Estimation for Complex Coastal Regions and Archipelagos. Ocean Modeling, 40(2), 164-189, doi: 10.1016/j.ocemod.2011.08.001.
- Ueckermann, M.P. and P.F.J. Lermusiaux, 2010. High Order Schemes for 2D Unsteady Biogeochemical Ocean Models. Ocean Dynamics, 60, 1415-1445, doi:10.1007/s10236-010-0351-x
- Haley, P.J., Jr. and P.F.J. Lermusiaux, 2010. Multiscale two-way embedding schemes for free-surface primitive-equations in the Multidisciplinary Simulation, Estimation and Assimilation System. Ocean Dynamics, 60, 1497-1537. doi:10.1007/s10236-010-0349-4.
- Deleersnijder, E., V. Legat and P.F.J. Lermusiaux, 2010. Multi-scale modelling of coastal, shelf and global ocean dynamics. Ocean Dynamics. 60, 1357-1359. doi:10.1007/s10236-010-0363-6.
- Deleersnijder, E. and P.F.J. Lermusiaux, (Guest Eds.), 2008. Multi-Scale Modelling: Nested Grid and Unstructured Mesh Approaches, Editorial. Ocean Dynamics, 58, 335-336, Springer. doi: 10.1007/s10236-008-0170-5.
- Logutov, O.G. and Lermusiaux, P.F.J., 2008. Inverse Barotropic Tidal Estimation for Regional Ocean Applications. Ocean Modeling, 25, 17-34. doi: 10.1016/j.ocemod.2008.06.004.
- Leslie, W.G., A.R. Robinson, P.J. Haley, O. Logoutov, P. Moreno, P.F.J. Lermusiaux, E. Coehlo, 2008. Verification and Training of Real-Time Forecasting of Multi-Scale Ocean Dynamics for MREA. Journal of Marine Systems, 69, 3-16, doi: 10.1016/j.jmarsys.2007.02.001.
Proceedings of Refereed Conferences
- Lermusiaux, P.F.J. and F. Lekien, 2005. Dynamics and Lagrangian Coherent Structures in the Ocean and their Uncertainty. Extended Abstract in report of the "Dynamical System Methods in Fluid Dynamics" Oberwolfach Workshop. Jerrold E. Marsden and Jurgen Scheurle (Eds.), Mathematisches Forschungsinstitut Oberwolfach, July 31st - August 6th, 2005, Germany. 2pp.
- Robinson, A.R., P.J. Haley, P.F.J. Lermusiaux and W.G. Leslie, 2002. Predictive Skill, Predictive Capability and Predictability in Ocean Forecasting. Proceedings of "The OCEANS 2002 MTS/IEEE" conference, Holland Publications, 787-794.
Computer Science
Papers in Refereed Journals
- Evangelinos, C., P.F.J. Lermusiaux, J. Xu, P.J. Haley, and C.N. Hill, 2011. Many Task Computing for Real-Time Uncertainty Prediction and Data Assimilation in the Ocean. IEEE Transactions on Parallel and Distributed Systems, Special Issue on Many-Task Computing, I. Foster, I. Raicu and Y. Zhao (Guest Eds.), 22, doi: 10.1109/TPDS.2011.64.
- Schofield, O., S. Glenn, J. Orcutt, M. Arrott, M. Meisinger, A. Gangopadhyay, W. Brown, R. Signell, M. Moline, Y. Chao, S. Chien, D. Thompson, A. Balasuriya, P.F.J. Lermusiaux and M. Oliver, 2010. Automated Sensor Networks to Advance Ocean Science. EOS, Vol. 91, No. 39, 28 September 2010.
- Patrikalakis, N.M., P.F.J. Lermusiaux, C. Evangelinos, J.J. McCarthy, A.R. Robinson, H. Schmidt, P.J. Haley, S. Lalis, R. Tian, W.G. Leslie, and W. Cho, 2009.
Towards Dynamic Data Driven Systems for Rapid Adaptive Interdisciplinary Ocean Forecasting Invited paper in "Dynamic Data-Driven Application Systems''. F. Darema, Editor. Springer, 2009. In press.
- Evangelinos, C., P.F.J. Lermusiaux, S. Geiger, R.C. Chang, and N.M. Patrikalakis, 2006. Web-Enabled Configuration and Control of Legacy Codes: An Application to Ocean Modeling. Ocean Modeling, 13, 197-220.
- Evangelinos C., R. Chang, P.F.J. Lermusiaux and N.M. Patrikalakis, 2003. Rapid real-time interdisciplinary ocean forecasting using adaptive sampling and adaptive modeling and legacy codes: Component encapsulation using XML. Lecture Notes in Computer Science, 2660, 375-384.
Proceedings of Refereed Conferences
- Evangelinos, C., P.F.J. Lermusiaux, J. Xu, P.J. Haley, and C.N. Hill, 2009. Many Task Computing for Multidisciplinary Ocean Sciences: Real-Time Uncertainty Prediction and Data Assimilation. Conference on High Performance Networking and Computing, Proceedings of the 2nd Workshop on Many-Task Computing on Grids and Supercomputers (Portland, OR, 16 November 2009), 10pp. doi.acm.org/10.1145/1646468.1646482.
- Robinson, A.R., B.J. Rothschild, W.G. Leslie, J.J. Bisagni, M.F. Borges, W.S. Brown, D. Cai, P. Fortier, A. Gangopadhyay, P.J. Haley, Jr., H.S. Kim, L. Lanerolle, P.F.J. Lermusiaux, C.J. Lozano, M.G. Miller, G. Strout and M.A. Sundermeyer, 2001. The development and demonstration of an advanced fisheries management information system. Proc. of the 17th Conference on Interactive Information and Processing Systems for Meteorology, Oceanography and Hydrology, Albuquerque, New Mexico. American Meteorological Society, 186-190.
MechE Theses
Bachelor's Theses
- Wamala, J., 2012. Stochastic Modeling of Flows behind a Square Cylinder with uncertain Reynolds numbers. BS Thesis, Massachusetts Institute of Technology, Department of Mechanical Engineering, June 2012.
- Kaufman, M.R.S., 2010. Upwelling Dynamics off Monterey Bay: Heat Flux and Temperature Variability, and their Sensitivities. BS Thesis, Massachusetts Institute of Technology, Department of Mechanical Engineering, May 2010.
Master's Theses
- Sondergaard, T., 2011. Data Assimilation with Gaussian Mixture Models using the Dynamically Orthogonal Field Equations. SM Thesis, Massachusetts Institute of Technology, Department of Mechanical Engineering, September 2011.
- Ueckermann, M.P., 2009. Towards Next Generation Ocean Models: Novel Discontinuous Galerkin Schemes for 2D unsteady biogeochemical models. SM Thesis, Massachusetts Institute of Technology, Department of Mechanical Engineering, September 2009.
- Agarwal, A., 2009. Statistical Field Estimation and Scale Estimation for Complex Coastal Regions and Archipelagos. SM Thesis, Massachusetts Institute of Technology, Department of Mechanical Engineering, May 2009.
- Burton, L.J., 2009. Modeling Coupled Physics and Biology in Ocean Straits with Application to the San Bernardino Strait in the Philippine Archipelago. SM Thesis, Massachusetts Institute of Technology, Department of Mechanical Engineering, May 2009.
- Heubel, E., 2008. Parameter Estimation and Adaptive Modeling Studies in Ocean Mixing. SM Thesis, Massachusetts Institute of Technology, Department of Mechanical Engineering, September 2008.
Ph.D. Theses
- Sapsis, Themis, 2011. Dynamically Orthogonal Field Equations for Stochastic Fluid Flows and Particle Dynamics. Ph.D. Thesis, Massachusetts Institute of Technology, Department of Mechanical Engineering, February 2011.
- Ding Wang, 2007. Adaptive Rapid Environmental Assessment. Ph.D. Thesis, Massachusetts Institute of Technology, Department of Mechanical Engineering, September 2007 (Co-supervised with Prof. Henrik Schmidt).
MSEAS Reports
- Ueckermann, Mattheus P. and Pierre F.J. Lermusiaux, 2012. 2.29 Finite Volume MATLAB Framework Documentation. MSEAS Report-14, August 2012.
- Mirabito, C., P.J. Haley, Jr., P.F.J. Lermusiaux and W.G. Leslie, 2012. A River Discharge Model for Coastal Taiwan during Typhoon Morakot. MSEAS Report-13, August 2012.
- Wamala, J., 2012. Stochastic Modeling of Flows behind a Square Cylinder with uncertain Reynolds numbers. MSEAS Report-12, May 2012.
- Ueckermann, M.P., P.F.J. Lermusiaux and T.P. Sapsis, 2011. Numerical Schemes and Studies for Dynamically Orthogonal Equations of Stochastic Fluid and Ocean Flows. MSEAS Report-11, August 2011.
- Sondergaard, T., 2011. Data Assimilation with Gaussian Mixture Models using the Dynamically Orthogonal Field Equations. MSEAS Report-10, September 2011.
- Yigit, Konuralp, 2011. Path Planning Methods for Autonomous Underwater Vehicles. MSEAS Report-09, June 2011.
- Sapsis, Themis, 2010. Dynamically Orthogonal Field Equations for Stochastic Fluid Flows and Particle Dynamics. MSEAS Report-08, October 2010.
- Agarwal, A. and P.F.J. Lermusiaux, 2010. Statistical field estimation for complex coastal regions and archipelagos. MSEAS Report-07. September 2010.
- Leslie, W.G. (editor), Patrick J. Haley, Jr., Pierre F.J. Lermusiaux, Mattheus P. Ueckermann, Oleg Logutov and Jinshan Xu, 2010. MSEAS Manual. MSEAS Report-06, July 2010.
- Kaufman, M.R.S., 2010. Upwelling Dynamics off Monterey Bay: Heat Flux and Temperature Variability, and their Sensitivities. MSEAS Report-05, May 2010.
- Ueckermann, M.P., 2009. Towards Next Generation Ocean Models: Novel Discontinuous Galerkin Schemes for 2D unsteady biogeochemical models. MSEAS Report-04, September 2009.
- Agarwal, A., 2009. Statistical Field Estimation and Scale Estimation for Complex Coastal Regions and Archipelagos. MSEAS Report-03, May 2009.
- Burton, L.J., 2009. Modeling Coupled Physics and Biology in Ocean Straits with Application to the San Bernardino Strait in the Philippine Archipelago. MSEAS Report-02, May 2009.
- Heubel, E., 2008. Parameter Estimation and Adaptive Modeling Studies in Ocean Mixing. MSEAS Report-01, September 2008.
